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Parallel Simulation of Carbon Nanotube Based Composites
Book chapter   Peer reviewed

Parallel Simulation of Carbon Nanotube Based Composites

Jyoti Kolhe, Usha Chandra, Sirish Namilae, Ashok Srinivasan and Namas Chandra
High Performance Computing - HiPC 2004: 11th International Conference, Bangalore, India, December 19-22, 2004, Proceedings, p.211
Lecture Notes in Computer Science, volume 3296, Springer Berlin Heidelberg
2004
DOI: https://doi.org/10.1007/978-3-540-30474-6_26
Web of Science ID: WOS:000227355800020

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Abstract

Computational simulation plays a vital role in nanotechnology. Molecular dynamics (MD) is an important computational method to understand the fundamental behavior of nanoscale systems, and to transform that understanding into useful products. MD computations, however, are severely restricted by the spatial and temporal scales of simulations. This paper describes the methods used to achieve effective spatial parallelization of a MD code that is based on a multi-body bond order potential. The material system studied here is a carbon nanotube (CNT). We discuss the scientific and computational issues in the development and implementation of parallel algorithms, when the domain needs to be discretized with fine granularity. Specific issues in terms of neighbor-list computation, communication reduction, and cache awareness are delineated, with corresponding benefit in terms of speed up.Important practical problems relevant to CNT based composites are studied, and the effectiveness of various strategies reported. Our implementation achieves efficient parallelization at a finer granularity compared with published works on CNTs with complex configurations.

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